01genomics&bioinformatics

01genomics&bioinformatics

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时间:2018-12-27

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1、ComputationalMolecularBiologyBiochem218–BioMedicalInformatics231http://biochem218.stanford.edu/GenomicsandBioinformaticsDougBrutlagProfessorEmeritusBiochemistry&Medicine(bycourtesy)Faculty,TAsandStaffDougBrutlagLeeKozarMaeveO’HuallachainDanDavisonCourseandVideoAvailabil

2、ity•AlwayM114–Tuesdays&Thursdays2:15-3:30PM•CourseWebSite–http://biochem218.stanford.edu/•StanfordCenterforProfessionalDevelopment–http://scpd.stanford.edu/•Videosavailable24hours/day,7days/week•CourseofferedAutumn,WinterandSpringquartersCourseRequirements•Lectures–Theo

3、reticalbackgroundofcurrentmethods–Strengthsandweaknessesofcurrentapproaches–Futuredirectionsforimprovements•Demonstrations–Applications(Mac,PC,Unix,Web)–Webapplications–Illustratehomework•Allhomeworkandquestionsmustbesubmittedbyemailtohomework218@cmgm.stanford.edu•Sever

4、alhomeworkassignments(35%)–Dueoneweekafterassigned•Finalproject(DueMarch12th)–Acriticalorcomparativereviewofcomputationalapproachestoanyproblemincomputationalmolecularbiology–Proposenewapproach–Implementanewapproach–Examplesofpreviousprojectsfortheclasscanbefoundathttp:

5、//biochem218.stanford.edu/Projects.htmlDavidMountBioinformatics:SequenceandGenomeAnalysis2ndEditionJinXiongEssentialBioinformaticsRichardDurbinetal.BiologicalSequenceAnalysisJones&PevznerBioinformaticsAlgorithmsDanGusfieldAlgorithmsonStrings,Trees&SequencesBaldi&BrunakBi

6、oinformatics:TheMachineLearningApproachHiggins&TaylorBioinformatics:Sequence,Structure&DatabanksNCBIHandbookhttp://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=handbookNCBIHandbookhttp://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=handbookEMBL-EBIHomePagehttp://www.ebi.a

7、c.uk/Berg,Tymoczko&StryerBiochemistry,FifthEditionBenjaminLewinGenesIXGenomics,Bioinformatics&ComputationalBiologyGenomicsBioinformaticsStructuralGenomicsProteomicsComputationalMolecularBiologyComputationalBiologyGenomics,Bioinformatics&ComputationalBiologyGenomicsBioin

8、formaticsSystemsBiologyStructuralGenomicsProteomicsComputationalMolecularBiologyComputationalBiologyGenomics,B

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