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1、BeginningPerlforBioinformaticsByJamesTisdallCopyright©2001O'Reilly&Associates,Inc.Allrightsreserved.241BeginningPerlforBioinformaticsAbouttheAuthorJamesTisdallhasworkedasamusician,asaprogrammerandmemberoftechnicalstaffatBellLabs(whereheprogrammedforspeechresearchanddiscoveredaformallanguagef
2、ormusicalrhythm),asaprogrammerandsystemsmanagerattheHumanGenomeProjectintheComputationalBiologyandInformaticsLaboratory(wherehebeganusingPerlforbioinformaticsin1991withhisprogramDNAWorkBench),ascomputationalbiologistatMercatorGeneticsinMenloPark,California(wherehisPerlprogramshelpeddiscovert
3、hegeneinvolvedinthecommonhereditarydiseasehemochromatosis),asmanagerofBioinformaticsattheFoxChaseCancerCenterinPhiladelphia,andmostrecentlyasaconsultantforBiocomputingAssociatesofKimberton,Pennsylvania,andtheBurkeResearchInstituteaffiliatedwithCornellUniversity,workingonneurodegenerativedise
4、asessuchasAlzheimer'sandParkinson's.Copyright©2001O'Reilly&Associates,Inc.Allrightsreserved.PrintedintheUnitedStatesofAmerica.PublishedbyO'Reilly&Associates,Inc.,1005GravensteinHighwayNorth,Sebastopol,CA95472.O'Reilly&Associatesbooksmaybepurchasedforeducational,business,orsalespromotionaluse
5、.Onlineeditionsarealsoavailableformosttitles(http://safari.oreilly.com).Formoreinformationcontactourcorporate/institutionalsalesdepartment:800-998-9938orcorporate@oreilly.com.NutshellHandbook,theNutshellHandbooklogo,andtheO'ReillylogoareregisteredtrademarksofO'Reilly&Associates,Inc.Manyofthe
6、designationsusedbymanufacturersandsellerstodistinguishtheirproductsareclaimedastrademarks.Wherethosedesignationsappearinthisbook,andO'Reilly&Associates,Inc.wasawareofatrademarkclaim,thedesignationshavebeenprintedincapsorinitialcaps.TheassociationbetweentheimageofatadpoleandthethetopicofPerlf
7、orbioinformaticsisatrademarkofO'Reilly&Associates,Inc.Whileeveryprecautionhasbeentakeninthepreparationofthisbook,thepublisherassumesnoresponsibilityforerrorsoromissions,orfordamagesresultingfromtheuseoftheinformationcontainedherein.241BeginningPerl