mastering_perl_for_bioinformatics

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1、PerlProgrammingforBioinformaticsMasteringPerlforBioinformaticsJamesD.TisdallMasteringPerlforBioinformaticsCopyrightForewordPrefaceAboutThisBookWhatYouNeedtoKnowtoUseThisBookOrganizationofThisBookConventionsUsedinThisBookCommentsandQuestionsAcknowledgmentsPartI:

2、Object-OrientedProgramminginPerlChapter1.ModularProgrammingwithPerlSection1.1.WhatIsaModule?Section1.2.WhyPerlModules?Section1.3.NamespacesSection1.4.PackagesSection1.5.DefiningModulesSection1.6.StoringModulesSection1.7.WritingYourFirstPerlModuleSection1.8.Usin

3、gModulesSection1.9.CPANModulesSection1.10.ExercisesChapter2.DataStructuresandStringAlgorithmsSection2.1.BasicPerlDataTypesSection2.2.ReferencesSection2.3.MatricesSection2.4.ComplexDataStructuresSection2.5.PrintingComplexDataStructuresSection2.6.DataStructuresin

4、ActionSection2.7.DynamicProgrammingSection2.8.ApproximateStringMatchingSection2.9.ResourcesSection2.10.ExercisesChapter3.Object-OrientedProgramminginPerlSection3.1.WhatIsObject-OrientedProgramming?Section3.2.UsingPerlClasses(WithoutWritingThem)Section3.3.Object

5、s,Methods,andClassesinPerlSection3.4.ArrowNotation(->)Section3.5.Gene1:AnExampleofaPerlClassSection3.6.DetailsoftheGene1ClassSection3.7.Gene2.pm:ASecondExampleofaPerlClassSection3.8.Gene3.pm:AThirdExampleofaPerlClassSection3.9.HowAUTOLOADWorksSection3.10.Cleani

6、ngUpUnusedObjectswithDESTROYSection3.11.Gene.pm:AFourthExampleofaPerlClassSection3.12.HowtoDocumentaPerlClasswithPODSection3.13.AdditionalTopicsSection3.14.ResourcesSection3.15.ExercisesChapter4.SequenceFormatsandInheritanceSection4.1.InheritanceSection4.2.File

7、IO.pm:AClasstoReadandWriteFilesSection4.3.SeqFileIO.pm:SequenceFileFormatsSection4.4.ResourcesSection4.5.ExercisesChapter5.AClassforRestrictionEnzymesSection5.1.EnvisioninganObjectSection5.2.Rebase.pm:AClassModuleSection5.3.Restriction.pm:FindingRecognitionSite

8、sSection5.4.DrawingRestrictionMapsSection5.5.ResourcesSection5.6.ExercisesPartII:PerlandBioinformaticsChapter6.PerlandRelationalDatabasesSection6.1.OnePerl,ManyDatabasesSect