Analysis of Phylogenetics And Evolution With R.pdf

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1、UseR!SeriesEditors:RobertGentlemanKurtHornikGiovanniParmigianiUseR!Paradis:AnalysisofPhylogeneticsandEvolutionwithRPfaff:AnalysisofIntegratedandCointegratedTimeSerieswithREmmanuelParadisAnalysisofPhylogeneticsandEvolutionwithREmmanuelParadisInstitutdeRecherchepourleDéve

2、loppementUR175CaviarGAMET-BP5095361rueJeanFrançoisBretonF-34196Montpellierc´edex5FranceEmmanuel.Paradis@mpl.ird.frSeriesEditors:RobertGentlemanKurtHornikPrograminComputationalBiologyDepartmentfürStatistikundMathematikDivisionofPublicHealthSciencesWirtschaftsuniversitätW

3、ienAugasse2-6FredHutchinsonCancerResearchCenterA-1090Wien1100FairviewAve.N,M2-B876AustriaSeattle,Washington,981029-1024USAGiovanniParmigianiTheSidneyKimmelComprehensiveCancerCenteratJohnsHopkinsUniversity550NorthBroadwayBaltimore,MD,21205-2011USALibraryofCongressControl

4、Number:2006923823ISBN-0-387-32914-5ISBN-978-0387-32914-7Printedonacid-freepaper.©2006SpringerScience+BusinessMedia,LLCAllrightsreserved.Thisworkmaynotbetranslatedorcopiedinwholeorinpartwithoutthewrittenpermissionofthepublisher(SpringerScience+BusinessMedia,LLC,233Spring

5、Street,NewYork,NY10013,USA),exceptforbriefexcerptsinconnectionwithreviewsorscholarlyanalysis.Useinconnectionwithanyformofinformationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilarmethodologynowknownorhereafterdevelopedisforbidden.Theuse

6、inthispublicationoftradenames,trademarks,servicemarks,andsimilarterms,eveniftheyarenotidentifiedassuch,isnottobetakenasanexpressionofopinionastowhetherornottheyaresubjecttoproprietaryrights.PrintedintheUnitedStatesofAmerica.(MVY)987654321springer.comtoLaurePrefaceAsares

7、ult,theinferenceofphylogeniesoftenseemsdivorcedfromanyconnectiontoothermethodsofanalysisofscientificdata.FelsensteinOncecalculationbecameeasy,thestatistician’senergiescouldbede-votedtounderstandinghisorherdataset.Venables&RipleyThestudyoftheevolutionoflifeonEarthstandsas

8、oneofthemostcomplexfieldsinscience.Itinvolvesobservationsfromverydifferentsources,andhasimplicationsfarbeyondthe