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1、UseR!SeriesEditors:RobertGentlemanKurtHornikGiovanniParmigianiUseR!Paradis:AnalysisofPhylogeneticsandEvolutionwithRPfaff:AnalysisofIntegratedandCointegratedTimeSerieswithREmmanuelParadisAnalysisofPhylogeneticsandEvolutionwithREmmanuelParadisInstitutdeRecherchepourleDéveloppementUR175
2、CaviarGAMET-BP5095361rueJeanFrançoisBretonF-34196Montpellierc´edex5FranceEmmanuel.Paradis@mpl.ird.frSeriesEditors:RobertGentlemanKurtHornikPrograminComputationalBiologyDepartmentfürStatistikundMathematikDivisionofPublicHealthSciencesWirtschaftsuniversitätWienAugasse2-6FredHutchinsonC
3、ancerResearchCenterA-1090Wien1100FairviewAve.N,M2-B876AustriaSeattle,Washington,981029-1024USAGiovanniParmigianiTheSidneyKimmelComprehensiveCancerCenteratJohnsHopkinsUniversity550NorthBroadwayBaltimore,MD,21205-2011USALibraryofCongressControlNumber:2006923823ISBN-0-387-32914-5ISBN-97
4、8-0387-32914-7Printedonacid-freepaper.©2006SpringerScience+BusinessMedia,LLCAllrightsreserved.Thisworkmaynotbetranslatedorcopiedinwholeorinpartwithoutthewrittenpermissionofthepublisher(SpringerScience+BusinessMedia,LLC,233SpringStreet,NewYork,NY10013,USA),exceptforbriefexcerptsinconn
5、ectionwithreviewsorscholarlyanalysis.Useinconnectionwithanyformofinformationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilarmethodologynowknownorhereafterdevelopedisforbidden.Theuseinthispublicationoftradenames,trademarks,servicemarks,andsimilarterms,
6、eveniftheyarenotidentifiedassuch,isnottobetakenasanexpressionofopinionastowhetherornottheyaresubjecttoproprietaryrights.PrintedintheUnitedStatesofAmerica.(MVY)987654321springer.comtoLaurePrefaceAsaresult,theinferenceofphylogeniesoftenseemsdivorcedfromanyconnectiontoothermethodsofanal
7、ysisofscientificdata.FelsensteinOncecalculationbecameeasy,thestatistician’senergiescouldbede-votedtounderstandinghisorherdataset.Venables&RipleyThestudyoftheevolutionoflifeonEarthstandsasoneofthemostcomplexfieldsinscience.Itinvolvesobservationsfromverydifferentsources,andhasimplications
8、farbeyondthe
