perfect phylogenetic networks a new methodology for reconstructing the evolutionary history

perfect phylogenetic networks a new methodology for reconstructing the evolutionary history

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时间:2019-03-08

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1、PERFECTPHYLOGENETICNETWORKS:ANEWMETHODOLOGYFORRECONSTRUCTINGTHEEVOLUTIONARYHISTORYOFNATURALLANGUAGESLUAYNAKHLEHDONRINGETANDYWARNOWRiceUniversityUniversityofUniversityofTexasPennsylvaniaInthisarticleweextendthemodeloflanguageevolutionexemplifiedinRingeetal.2002,whichr

2、ecoversphylogenetictreesoptimizedaccordingtoacriterionofweightedmaximumcom-patibility,toincludecasesinwhichlanguagesremainincontactandtradelinguisticmaterialastheyevolve.WedescribeouranalysisofanIndo-European(IE)dataset(originallyassembledbyRingeandTaylor)basedonthis

3、newmodel.OurstudyshowsthatthisnewmodelfitstheIEfamilywellandsuggeststhattheearlyevolutionofIEinvolvedonlylimitedcontactbetweendistinctlineages.Furthermore,thecandidatehistoriesweobtainappeartobeconsistentwitharchaeologicalfindings,whichsuggeststhatthismethodmaybeofpr

4、acticaluse.Thecaseathandprovidesnoopportunitytoexploretheproblemofconflictbetweennetworkoptimizationcriteria;thatproblemmustbelefttofutureresearch.*1.INTRODUCTION.Languagesdifferentiateanddivideintonewlanguagesbyapro-cessroughlysimilartobiologicalspeciation:1communit

5、iesseparate(typicallygeo-graphically),thelanguagechangesdifferentlyineachofthenewcommunities,andintimepeoplefromseparatecommunitiescannolongerunderstandeachother.2Whilethisisnottheonlywayinwhichlanguageschange,itisthisprocessthatisreferredtowhenwesay,forexample,‘Fren

6、chandItalianarebothdescendantsofLatin’.Theevolutionoffamiliesofrelatedlanguagescanbemodeledmathematicallyasarootedtreeinwhichinternalnodesrepresentancestrallanguagesatthepointsintimeatwhichtheybegantodiversifyandtheleavesrepresentattestedlanguages.Reconstructingthisp

7、rocessforvariouslanguagefamiliesisamajorendeavorwithinhistoricallinguistics,butitisalsoofinteresttoarchaeologists,humangeneticists,andphysicalanthropolo-gists,forexample,becauseanaccuratereconstructionofhowparticularfamiliesoflanguageshaveevolvedcanhelpanswerquestion

8、sabouthumanmigrations,thetimesatwhichnewtechnologieswerefirstdeveloped,whenancientpeoplebegantouse*ThisworkwassupportedinpartbytheD

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