data capture specification - europhenome数据采集规范europhenome

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1、EuroPhenomeDataUploadSpecification1:SystemOverviewFigure1.Europhenomefileretrievalprocessdiagram1.1:DataRetrievalDatawillbecapturedintoEuroPhenomeviabothcustomwebinterfacesandautomatedXMLfiletransfers.Thedatacanbedividedintothreeareas;1:CentreandEnvironmentalData2:MutantData3:ProcedureDa

2、taThecentreandenvironmentaldatawillbecapturedviaawebinterface(seesection1.1.1)andtheprocedureandmouse/cohortdatawillbecapturedasXMLfiles(seesection1.1.2and1.1.3).1.1.1:CentreandEnvironmentDataAwebinterfacehasbeendevelopedtoallowentryofthisdatapercentreandcanbeeditedwithastartandenddatean

3、dtimeforwhenitchangedandatextboxtoexplainwhythechangehappened.Thisuserinterfacerequiresregistrationtologinandregistrationisinitiallymadeaccessibletooneortwomanagersfromeachofthecentres.Itisthereforetheresponsibilityofthesemanagerstoensurethedataischangedifsomethingwithintheiranimalfacili

4、tyalters.HousingParameterUnitsTemperatureCHumidityAirchangesno/hourRelativePressureLightLevelsluxLight-timeonTimeLight-timeoffTimeDawnperiodMinsDuskperiodMinsFeed/DietSourceTextFeed/DietNameTextWaterpHpHCagelitterTextCagebeddingTextCageEnrichmentCagemakeandmodelCagesize(width,length&heig

5、ht)TexttextmmNoiselevelCentrePersondBMRC/GSF/ICS/Sanger/CMHDID/NameDate/TimeaddedCommentDate/TimeFreeText1.1.2:MouseDataDataabouttheindividualanimalsareuploadedinacohortXMLfile,asallanimalstestedarepartofacohort.Thisshouldbeuploadedatthelatestwiththefirstprocedurefilethatrelatestothatmou

6、seorcohort.Thisfileisto‘initialize’themouseintheEurophenomedatabase,readytohavemeasurementinformationattached.Anoutlineofthedataitshouldholdisshowninthefollowingschema.1.1.2.1XMLTagmeaningsTag:cohortSetTheroottagforthedocument.Thiscontainsallthecohorts.Tag:cohortThiscontainstheinformatio

7、nforonecohort.Mostofthegenotypeinformationisheldintheattributesofthistag:RequiredAttributes:Source=thesourceofthemutant,soeitherfromaprojectlikeEUCOMMorainternalmutante.gEUCOMMorINTERNALStrain=BackgroundStrainofOrigine.gC57BL/6NCloneName=ESCellLineIDe.g.EPDNo.forEUCOMM.Th