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1、Downloadedfromgenome.cshlp.orgonNovember17,2016-PublishedbyColdSpringHarborLaboratoryPressll
2、llllManualSupplementMultiplexPCR:EversinceitwasshownthatPCRcouldsimultaneouslyamplifymultiplelociinthehumandystrophingene,(1)multiplexPCRhasbeenfirmlyestablishedAdvantages,asageneraltechnique.Ashortlisto
3、fmultiplexPCRapplicationsnowin-Development,cludespathogenidentification,genderscreening,linkageanalysis,forensicstudies,templatequantitation,andgeneticdiseasediagnosis.MultiplexPCRandcanbeatwo-ampliconsystemoritcanamplify13ormoreseparateregionsApplicationsofDNA.Itmaybetheendpointofanalysis,orpre
4、liminarytofurtheranalysessuchassequencingorhybridization.ThestepsfordevelopingamultiplexPCRandthebenefitsofhavingmultiplefragmentsamplifiedsimultaneously,however,aresimilarineachsystem.ThisreviewfocusesonmultiplexsystemsinwhicheachprimerpairtargetsMaryC.Edwardsandasinglelocus,unlikeRAPD(2)andalu
5、morph{3)PCRreactions,whichamplifyRichardA.Gibbsmultiplelociwithasingleprimerorprimerset.InstituteforMolecularGenetics,BaylorCollegeofMedicine,ADVANTAGESOFMULTIPLEXPCRHouston,Texas77030InternalControlsPotentialproblemsinPCRincludefalsenegativesduetoreactionfailureorfalsepositivesduetocontaminatio
6、n.Falsenegativesareoftenrevealedinmultiplexamplificationbecauseeachampliconprovidesaninternalcontrolfortheotheramplifiedfragments.Forexample,multipleexonsmaybeam-plifiedinassaysthatsurveyforgenedeletion.UnlesstheentireregionscannedbythemultiplexPCRisdeleted,amplificationofsomefragment(s)indicate
7、sthatthereactionhasnotfailed(Fig.1A).Furthermore,becausemajordeletionsareusuallycontiguous,(4)resultsthatsuggestnoncontiguousdeletionsbasedontheabsenceofbandsusuallyreflectartifactualfailureofsomefragmentstoamplify.CompletePCRfailurecanbedistinguishedfromaninformativeno-amplificationresultbyaddi
8、ngacontrolampliconexternaltothetargetsequencetothereaction.(s'6)InadditiontomonitoringPCRfailureandartifacts,internalcontrolampliconscanbedesignedtoverifythepresenceoftargettemplate.Inmultiplexassayswherecloselyrelatedtem-pl