Springer.XML.for.Bioinformatics.[Springer.2005]

《Springer.XML.for.Bioinformatics.[Springer.2005]》由会员上传分享，免费在线阅读，更多相关内容在学术论文-天天文库。

1、XMLforBioinformaticsEthanCeramiXMLforBioinformaticsLibraryofCongressCataloging-in-PublicationDataCerami,Ethan.XMLforbioinformatics/EthanCerami.p.cm.Includesbibliographicalreferencesandindex.ISBN0-387-23028-91.XML(Documentmarkuplanguage)2.Bioinformatics.I.Title.QA76.76.H94C472005572.8
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2、4–dc222004058903ISBN0-387-23028-9C2005SpringerScience+BusinessMedia,Inc.Allrightsreserved.Thisworkmaynotbetranslatedorcopiedinwholeorinpartwithoutthewrittenpermissionofthepublisher(SpringerScience+BusinessMedia,Inc.,233SpringStreet,NewYork,NY10013,USA),exceptforbriefexcerptsinconnectionwith

3、reviewsorscholarlyanalysis.Useinconnectionwithanyformofinformationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilarmethodologynowknownorhereafterdevelopedisforbidden.Theuseinthispublicationoftradenames,trademarks,servicemarksandsimilarterms,eveniftheyarenotide

4、ntifiedassuch,isnottobetakenasanexpressionofopinionastowhetherornottheyaresubjecttoproprietaryrights.PrintedintheUnitedStatesofAmerica.987654321springeronline.comToLilyCerami.Welcometotheworld.PrefaceIntroductionThegoalofthisbookistointroduceXMLtoabioinformaticsaudience.Itdoessobyintroducingt

5、hefundamentalsofXML,DocumentTypeDefinitions(DTDs),XMLNamespaces,XMLSchema,andXMLparsing,andillustratingtheseconceptswithspecificbioinformaticscasestudies.ThebookdoesnotassumeanypreviousknowledgeofXMLandisgearedtowardthosewhowantasolidintroductiontofundamentalXMLconcepts.Thebookisdividedintonin

6、echapters:
Chapter1:IntroductiontoXMLforBioinformatics.ThischapterprovidesanintroductiontoXMLanddescribestheuseofXMLinbiologicaldataexchange.Abird’s-eyeviewofourfirstcasestudy,theDistributedAnnotationSystem(DAS),isprovidedandweexamineasampleDASXMLdocument.Thechapterconcludeswithadiscussionoft

7、heprosandconsofusingXMLinbioinformaticapplications.
Chapter2:FundamentalsofXMLandBSML.ThischapterintroducesthefundamentalconceptsofXMLandtheBioinformaticSequenceMarkupLanguage(BSML).WeexploretheoriginsofXML,definebasicrulesforXMLdocumentstructure,an